FASTA format test alignment

Alignment in FASTA format

Your aligned sequences should be in the format below. You can use these as examples to test the server.

Note that all white spaces and carriage returns in the sequence are ignored. However, all non-alphabetic, non-white space characters in the sequence (apart from trailing asterisks) are treated as gaps. To comply with FASTA format all gaps in your sequence should be dashes.

Alignment No. 1:

>3sil (the target sequence)
------------------------------------------------------------------------------
---------------------------------------------------------------KSVVFKAEGEHFTD-
------QKGNTIVGSGSGGTT---------------KYFRIP------AMCTTSKGTIVVFADARHNTASDQSFIDT-
--AAARSTDGGKTWNKKIAIYNDRVNSKLSRVMDPTCIVANI
>1kit (the PDB template sequence)
ALFDYNATGDTEFDSPAKQGWMQDNTNNGSGVLTNADGMPAWLVQGIGGRAQWTYSLSTNQHAQASSFGWRMTTEMKV
LSGGMITNYYANGTQRVLPIISLDSSGNLVVEFEGQTGRTVLATGTAATEYHKFELVFLPGSNPSASFYFDGKLIRDN
IQPTASKQNMIVWGNGSSNTDGVAAYRDIKFEIQGDVIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTN
DIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPIYD--




Alignment No. 2:

>jcha (the target sequence)
MQQGQ-PMIILGEDSQLTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSSGQVVV 
TNDGFTILKEMDIDHPAANMIVEVSETQETEVGDGTTTAVIIAGELLDQAEDLLESDVHA 
TTIAQGYRQAAEKAKEVLEDNAIEVTEDDHETLQKIAATAMTGKGAESAKDLLAELVVDA 
VLA---VKDDDSI-DTDNVSIEKVVGGTINNSELVEGVIVDKERVDENMPFAVEDADIAI 
LDDALEVRETEIDAEVNVTDPDQLQQFLDQEEKQLKEMVDQLVDVGADVVFVGDGIDDMA 
QHYLAKEGILAVRRAKSSDLKRLARATGGRVVSNLEDIEADDLGFAGSVGQKDIGGDERI 
FVEDVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLT 
LREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRHDGGEFAAGLDA 
YTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIAA 
>1a6dA (the PDB template sequence)
MMTGQVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIII 
SNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHP 
TVISNGYRLAVNEARKIIDEIAEKSTDD--ATLRKIALTALSGKNTGLSNDFLADLVVKA 
VNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIAL 
IDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVA 
QHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMT 
FVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMR
LAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDL 
DNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIAS